Whole genome data reveal the complex history of a diverse ecological community - scripts/input data

Abstract

Included are the scripts and input data needed to replicate the analyses in our manuscript, Whole genome data reveal the complex history of a diverse ecological community including python scripts and Mathematica notebooks. In brief, we provide the python scripts need to convert whole genome variant data for 13 species of gallwasps and parasitoid wasps into counts of mutational configurations in short sequence blocks. These counts form the input data for the suite of Mathematica notebooks provided that replicate the analysis pipeline outlined in Bunnefeld et al.