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Please use this identifier to cite or link to this item: http://hdl.handle.net/11667/113
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dc.contributorBunnefeld, Lynsey-
dc.contributor.otherNERC - Natural Environment Research Councilen_GB
dc.creatorBunnefeld, Lynsey-
dc.creatorHearn, Jack-
dc.creatorStone, Graham N-
dc.creatorLohse, Konrad-
dc.date.accessioned2018-04-19T10:47:43Z-
dc.date.available2018-04-19T10:47:43Z-
dc.identifier.urihttp://hdl.handle.net/11667/113-
dc.description.abstractIncluded are the scripts and input data needed to replicate the analyses in our manuscript, Whole genome data reveal the complex history of a diverse ecological community including python scripts and Mathematica notebooks. In brief, we provide the python scripts need to convert whole genome variant data for 13 species of gallwasps and parasitoid wasps into counts of mutational configurations in short sequence blocks. These counts form the input data for the suite of Mathematica notebooks provided that replicate the analysis pipeline outlined in Bunnefeld et al.en_GB
dc.description.tableofcontentsA README text file in the folder briefly explains how to run through the analyses (which order to access scripts and notebooks and what data is in which subfolder. Dedicated UnZip software is recommended for accessing the dataset, for example, IZArc.en_GB
dc.language.isoengen_GB
dc.publisherUniversity of Stirling. Faculty of Natural Sciences.en_GB
dc.relationBunnefeld, L; Hearn, J; Stone, GN; Lohse, K (2018): Whole genome data reveal the complex history of a diverse ecological community - scripts/input data. University of Stirling. Faculty of Natural Sciences. Dataset. http://hdl.handle.net/11667/113en_GB
dc.relation.isreferencedbyBunnefeld, L., Hearn, J., Stone, G.N. and Lohse, K. (2018) Whole-genome data reveal the complex history of a diverse ecological community. Proceedings of the National Academy of Sciences, 115 (28), pp. E6507-E6515. DOI: https://doi.org/10.1073/pnas.1800334115. Available from: http://hdl.handle.net/1893/27624en_GB
dc.rightsRights covered by the standard CC-BY 4.0 licence: https://creativecommons.org/licenses/by/4.0/en_GB
dc.subject.classification::Ecology, biodiversity and systematicsen_GB
dc.titleWhole genome data reveal the complex history of a diverse ecological community - scripts/input dataen_GB
dc.typedataseten_GB
dc.contributor.emaillynsey.bunnefeld@stir.ac.uken_GB
dc.identifier.projectidNE/J010499/1en_GB
dc.title.projectWhole genome data reveal the complex history of a diverse ecological communityen_GB
dc.contributor.affiliationUniversity of Stirling (Biological and Environmental Sciences)en_GB
dc.contributor.affiliationUniversity of Edinburghen_GB
dc.date.publicationyear2018en_GB
dc.description.accessRaw variant files are not included due to size, contact us (lynsey.bunnefeld@stir.ac.uk) if variant files are needed. These files will be uploaded to a public sequence archive upon manuscript acceptance. Raw reads are uploaded in the short sequence archive (PRJEB15172).en_GB
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